CytoMAP
引用
Stoltzfus, Caleb R., et al. “CytoMAP: A Spatial Analysis Toolbox Reveals Features of Myeloid Cell Organization in Lymphoid Tissues.” Cell Reports, vol. 31, no. 3, Elsevier BV, Apr. 2020, p. 107523, doi:10.1016/j.celrep.2020.107523.
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タグ
謝辞
ヒントを得たファイル: fca_readfcs, PeterBeemiller/ImarisReader, Uniform Manifold Approximation and Projection (UMAP)
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CytoMAP/3rdPartyFunctions
CytoMAP/3rdPartyFunctions/ImarisReader
CytoMAP/Dimensionality Reduction/LLE
CytoMAP/Dimensionality Reduction/LLE/LLE
CytoMAP/Dimensionality Reduction/PHATE (krishnaswamy Lab)
CytoMAP/Dimensionality Reduction/PHATE (krishnaswamy Lab)/PHATE
CytoMAP/Dimensionality Reduction/Principal Components
CytoMAP/Dimensionality Reduction/TSCAN
CytoMAP/Dimensionality Reduction/TSCAN/TSCAN
CytoMAP/Dimensionality Reduction/UMAP (Herzenberg Lab)
CytoMAP/Dimensionality Reduction/UMAP (Herzenberg Lab)/umap
CytoMAP/Dimensionality Reduction/UMAP (Herzenberg Lab)/util
CytoMAP/Dimensionality Reduction/t-SNE
CytoMAP/Extensions
Tests
Tests/test_data
バージョン | 公開済み | リリース ノート | |
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1.4.22 | See release notes for this release on GitHub: https://github.com/DrStoltzfus/CytoMAP/releases/tag/1.4.22 |
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1.4.21 | > added option to change overlap threshold in interaction plots
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1.4.20 | > Fixed a bug in plotting neighborhoods
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1.4.19 | > Added option to replace missing values with numbers instead of NaNs
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1.4.18 | > Improved loading table of cells stability
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1.4.17 | > Added the option to have a beep played when a function finishes
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1.4.16 | - Added extension for re-ordering samples
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1.4.15 | > Fixed non-cylindrical neighborhood issue for samples with thickness close to neighborhood radius
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1.4.14 | > Added the option to name dimensionality reduction models
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1.4.13 | > Added DBSCAN to clustering options
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1.4.12 | > Fixed color limits in neighborhood clustering output plots
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1.4.11 | > Faster more stable cell-centered neighborhoods
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1.4.10 | > Plot Gates no longer fills in the points by default. (Added right click to enable)
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1.4.9 | > Fixed bugs in loading .csv files with mixed strings and numericals
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1.4.8 | > Added more options to the data export functionality
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1.4.7 | > Added functionality to options button in New Figures (change point colors, invert axes etc.)
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1.4.6 | > Annotate clusters now auto-populates names when using a string based classifier channel |
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1.4.5 | > Load .csv now supports mixed numerical and string features
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1.4.4 | > Increased functionality of annotate regions and annotate cells
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1.4.3 | > Added a select manual regions interface
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1.4.2 | > Added annotate regions extension
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1.4.1 | fixed a bug in export csv data |
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1.4 | Updated extensions
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1.3 | - Updated .wsp loader
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1.2 | Fixed install path issue |
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1.1 |