SimBiology

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Hi, I am learning to use SimBiology to streamline generating model equations for my metabolic network. I have 13C and 14C metabolite labeling data obtained from pulse chase labeling of tobacco plants and am just not sure which toolboxes will be useful for analyzing the pathways within the network. I'm pretty sure I should install the optimization toolbox and ODE/PDE toolboxes but what else should I begin learning how to use within SimBiology? I will use the SimBiology interface to generate the pathways/compartments etc. and then I will convert to MatLab code to populate a script with the model equations. Where do I find guidance on these very tedious tasks to gain a more complete understanding of the Simbiology to MatLab integration? I'm doing my PhD in my 4th year and really want to understand the computational techniques I need to generate useful models to fully utilize all the bench time I've spent gathering data through experimentation. Will someone point me in a direction that I can integrate my knowledge of metabolism with the power of computation in Matlab?!??! Thank you all and have a great day/night!