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The study of nonlinear dynamical systems in lattices is an area of research with continuously growing interest.The first systematic studies of these systems emerged in the late 1930 s,thanks to the work of Frenkel and Kontorova on crystal dislocations.These studies led to the formulation of the discrete Klein-Gordon equation (DKG).Specifically,in 1939,Frenkel and Kontorova proposed a model that describes the structure and dynamics of a crystal lattice in a dislocation core.The FK model has become one of the fundamental models in physics,as it has been proven to reliably describe significant phenomena observed in discrete media.The equation we will examine is a variation of the following form:
The process described involves approximating a nonlinear differential equation through the Taylor method and simplifying it into a linear model.Let's analyze step by step the process from the initial equation to its final form.For small angles, can be approximated through the Taylor series as:
We substitute in the original equation with the Taylor approximation:
To map this equation to a linear model,we consider the angles to correspond to displacements in a mass-spring system.Thus,the equation transforms into:
We recognize that the term expresses the nonlinearity of the system,while β is a coefficient corresponding to this nonlinearity,simplifying the expression.The final form of the equation is:
The exact value of β depends on the mapping of coefficients in the Taylor approximation and its application to the specific physical problem.Our main goal is to derive results regarding stability and convergence in nonlinear lattices under nonlinear conditions.We will examine the basic characteristics of the discrete Klein-Gordon equation:
This model is often used to describe the opening of the DNA double helix during processes such as transcription.The model focuses on the transverse motion of the base pairs,which can be represented by a set of coupled nonlinear differential equations.
% Parameters
numBases = 50; % Number of base pairs
kappa = 0.1; % Elasticity constant
omegaD = 0.2; % Frequency term
beta = 0.05; % Nonlinearity coefficient
% Initial conditions
initialPositions = 0.01 + (0.02 - 0.01) * rand(numBases, 1);
initialVelocities = zeros(numBases, 1);
Time span
tSpan = [0 50];
>> % Differential equations
odeFunc = @(t, y) [y(numBases+1:end); ... % velocities
kappa * ([y(2); y(3:numBases); 0] - 2 * y(1:numBases) + [0; y(1:numBases-1)]) + ...
omegaD^2 * (y(1:numBases) - beta * y(1:numBases).^3)]; % accelerations
% Solve the system
[T, Y] = ode45(odeFunc, tSpan, [initialPositions; initialVelocities]);
% Visualization
plot(T, Y(:, 1:numBases))
legend(arrayfun(@(n) sprintf('Base %d', n), 1:numBases, 'UniformOutput', false))
xlabel('Time')
ylabel('Position')
title('Dynamics of DNA Base Pairs')
% Choose a specific time for the snapshot
snapshotTime = 10;
% Find the index in T that is closest to the snapshot time
[~, snapshotIndex] = min(abs(T - snapshotTime));
% Extract the solution at the snapshot time
snapshotSolution = Y(snapshotIndex, 1:numBases);
% Generate discrete plot for the DNA model at the snapshot time
figure;
stem(1:numBases, snapshotSolution, 'filled')
title(sprintf('DNA Model Displacement at t = %d', snapshotTime))
xlabel('Base Pair Index')
ylabel('Displacement')
% Time vector for detailed sampling
tDetailed = 0:0.5:50;
% Initialize an empty array to hold the data
data = [];
% Generate the data for 3D plotting
for i = 1:numBases
% Interpolate to get detailed solution data for each base pair
detailedSolution = interp1(T, Y(:, i), tDetailed);
% Concatenate the current base pair's data to the main data array
data = [data; repmat(i, length(tDetailed), 1), tDetailed', detailedSolution'];
end
% 3D Plot
figure;
scatter3(data(:,1), data(:,2), data(:,3), 10, data(:,3), 'filled')
xlabel('Base Pair')
ylabel('Time')
zlabel('Displacement')
title('3D Plot of DNA Base Pair Displacements Over Time')
colormap('rainbow')
colorbar
Hannah
Hannah
Last activity 2024 年 3 月 26 日

Transforming Snake Animation!

Lots of students like me have a break from school this week or next! If y'all are looking for something interesting to do learn a bit about using hgtransform by making the transforming snake animation in MATLAB!
Code below!
⬇️⬇️⬇️
numblock=24;
v = [ -1 -1 -1 ; 1 -1 -1 ; -1 1 -1 ; -1 1 1 ; -1 -1 1 ; 1 -1 1 ];
f = [ 1 2 3 nan; 5 6 4 nan; 1 2 6 5; 1 5 4 3; 3 4 6 2 ];
clr = hsv(numblock);
shapes = [ 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 % box
0 0 .5 -.5 .5 0 1 0 -.5 .5 -.5 0 1 0 .5 -.5 .5 0 1 0 -.5 .5 -.5 0 % fluer
0 0 1 1 0 .5 -.5 1 .5 .5 -.5 -.5 1 .5 .5 -.5 -.5 1 .5 .5 -.5 -.5 1 .5 % bowl
0 .5 -.5 -.5 .5 -.5 .5 .5 -.5 .5 -.5 -.5 .5 -.5 .5 .5 -.5 .5 -.5 -.5 .5 -.5 .5 .5]; % ball
% Build the assembly
set(gcf,'color','black');
daspect(newplot,[1 1 1]);
xform=@(R)makehgtform('axisrotate',[0 1 0],R,'zrotate',pi/2,'yrotate',pi,'translate',[2 0 0]);
P=hgtransform('Parent',gca,'Matrix',makehgtform('xrotate',pi*.5,'zrotate',pi*-.8));
for i = 1:numblock
P = hgtransform('Parent',P,'Matrix',xform(shapes(end,i)*pi));
patch('Parent',P, 'Vertices', v, 'Faces', f, 'FaceColor',clr(i,:),'EdgeColor','none');
patch('Parent',P, 'Vertices', v*.75, 'Faces', f(end,:), 'FaceColor','none',...
'EdgeColor','w','LineWidth',2);
end
view([10 60]);
axis tight vis3d off
camlight
% Setup vectors for animation
h=findobj(gca,'type','hgtransform')'; h=h(2:end);
r=shapes(end,:)*pi;
steps=100;
% Animate between different shapes
for si = 1:size(shapes,1)
sh = shapes(si,:)*pi;
diff = (sh-r)/steps;
% Animate to a new shape
for s=1:steps
arrayfun(@(tx)set(h(tx),'Matrix',xform(r(tx)+diff(tx)*s)),1:numblock);
view([s*360/steps 20]); drawnow();
end
r=sh;
for s=1:steps; view([s*360/steps 20]); drawnow(); end % finish rotate
end
We are thrilled to announce the launch of a brand-new area within the MATLAB Central community – 'Discussions'. This exciting addition is designed to foster a stronger and more connected community.
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s = ['M','A','T','L','A','B']
9%
char([77,65,84,76,65,66])
7%
"MAT" + "LAB"
21%
upper(char('matlab' - '0' + 48))
17%
fliplr("BALTAM")
17%
rot90(rot90('BALTAM'))
30%
2929 票
The File Exchange team is thrilled to introduce a more streamlined approach to working with GitHub and File Exchange - the MATLAB and Simulink Integration for GitHub!
Key Enhancements:
- Improves the existing connection between File Exchange and GitHub, ensuring quicker reflection of changes made in GitHub within File Exchange.
- Aligns with GitHub's standard and supported approach to building integrations.
Action Required for File Exchange Contributors!
If you are a File Exchange contributor and have linked any submissions to GitHub, it is essential to install the App.
Starting April 16, 2024, your File Exchange submissions will no longer update automatically unless you take the following steps:
1. Visit your My File Exchange page.
2. Follow the prompts on the page to install MATLAB and Simulink Integration for GitHub.
3. Complete the necessary steps in GitHub.
4. Return to the My File Exchange page and verify the installation.
A detailed description of the process is available here.
If you prefer your File Exchange submission not to update automatically from GitHub, no action is required. Users will still be able to find and download your submissions. However, to release a new version of your code, you must either install the GitHub App or disconnect from GitHub and manually upload new versions of your code.
Should you have any questions or encounter issues with the App, please feel free to comment on this post!
Nikolaos
Nikolaos
Last activity 2024 年 2 月 29 日

How to access English-speaking forum?

I asked my question in the general forum and a few minutes later it was deleted. Perhaps this is a better place?
Rather than using my German regional forum (as I do not speak German), I want to ask questions in an international English-speaking forum. Presumably there should be an international English forum for everyone around the world, as English is the first or second language of everyone who has gone to school. Where is it?
Big congratulations to @VBBV for achieving the remarkable milestone of 3,000 reputation points, earning the prestigious title of Editor within our community.
This achievement is a testament to @VBBV's exceptional contributions and steadfast commitment to the community. These efforts have also been endorsed by fellow top contributors, underscoring the value and impact of @VBBV's expertise.
Welcome to the Editors' Club, @VBBV – we are excited to witness and support your continued journey and influence within our community!
eye(3) - diag(ones(1,3))
11%
0 ./ ones(3)
9%
cos(repmat(pi/2, [3,3]))
16%
zeros(3)
20%
A(3, 3) = 0
32%
mtimes([1;1;0], [0,0,0])
12%
3009 票
Chen Lin
Chen Lin
Last activity 2024 年 2 月 10 日

Fun Spring Festival Couplets

Happy year of the dragon.

Hannah
Hannah
Last activity 2024 年 2 月 8 日

Prize Wheel?

I was looking into the possibility of making a spin-to-win prize wheel in MATLAB. I was looking around, and if someone has made one before they haven't shared. A labeled colored spinning wheel, that would slow down and stop (or I would take just stopping) at a random spot each time. I would love any tips or links to helpful resources!
Many of the examples in the MATLAB documentation are extremely high quality articles, often worthy of attention in their own right. Time to start celebrating them! Today's is how to increase Image Resolution using deep learning
https://uk.mathworks.com/help/deeplearning/ug/single-image-super-resolution-using-deep-learning.html
Chen Lin
Chen Lin
Last activity 2024 年 2 月 15 日

How many circles do you find in this picture?

Can you see them?
Hannah
Hannah
Last activity 2024 年 2 月 8 日

Flipbook Mini Hack

I have been procrastinating on schoolwork by looking at all the amazing designs created in the last MATLAB Flipbook Mini Hack! They are just amazing. The voting is over but what are y'all's personal favorites? Mine is the flapping butterfly, it is for sure a creation I plan to share with others in the future!
Xiang Xu
Xiang Xu
Last activity 2024 年 3 月 11 日

Is struct harmful for MATLAB projects?

Struct is an easy way to combine different types of variants. But now MATLAB supports classes well, and I think class is always a better alternative than struct. I can't find a single scenario that struct is necessary. There are many shortcomings using structs in a project, e.g. uncontrollable field names, unexamined values, etc. What's your opinion?
Umar Khan
Umar Khan
Last activity 2024 年 2 月 22 日

Which one makes sense?

I am confused, is the matlab answer better or Julia’s?

David
David
Last activity 2024 年 7 月 15 日

Read this before posting

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Enjoy yourself and have fun! We're committed to fostering a supportive and educational environment. Dive into discussions, share your expertise, and grow your knowledge. We're excited to see what you'll contribute to the community!
Have you ever used Live Tasks in MATLAB? MathWorks development team would like to get some feedback on your experience – what did you like and not like. Especially, if you know about it but don’t use it frequently, we would like to understand why?
Please tell us what you think by submitting your response to this form https://forms.office.com/r/ui1EGqAFDx
Mike Croucher
Mike Croucher
Last activity 2024 年 1 月 29 日

Pong Wars in MATLAB

One of my colleauges, Michio, recently posted an implementation of Pong Wars in MATLAB
Making me wonder about variations. What might the resulting patterns look with differing numbers of balls? Different physics etc?
MathWorks just released three new courses on Coursera liseted below. If you work with image or video data and are wanting to incorporate deep learning techniques into your workflow, this is a great opporutnity. The course creators monitor the discussion forums, so you can ask questions and get feedback on your work. Below are links to the three courses and a quick description of a project you'll complete in each.
  1. Introduction to Computer Vision for Deep Learning. You'll train a classifier to classify images of people signing the American Sign Language alphabet.
  2. Deep Learning for Object Detection. Move from just classification to finding object locations. You'll train a model to find different types of parking available on the MathWorks campus.
  3. Advanced Deep Learning Techniques for Computer Vision. You'll train anomaly detection models for medical images and use AI-assisted labeling auto label images.
I just now discovered Discussions.
Can anyone provide insight into the intended difference between Discussions and Answers and what should be posted where?
Just scrolling through Discussions, I saw postst that seem more suitable Answers?
What exactly does Discussions bring to the table that wasn't already brought by Answers?
Maybe this question is more suitable for a Discussion ....