How do I read large FASTA files into MATLAB using BioInformatics toolbox 2.1.1 (R14SP3)?
1 回表示 (過去 30 日間)
古いコメントを表示
I have a very large FASTA file that I am trying to read into MATLAB using the FASTAREAD function from the BioInformatics toolbox 2.1.1 (R14SP3). However, when I try to do so, initially MATLAB freezes and slowly the system stops responding.
採用された回答
MathWorks Support Team
2009 年 6 月 27 日
You can observe this behavior when the size of the FASTA file is too big for MATLAB to handle. To workaround this issue, you can split a big FASTA file into smaller pieces and use the FASTAREAD function to read the smaller files into MATLAB.
The utility to split FASTA files into smaller pieces is attached to this document.
0 件のコメント
その他の回答 (0 件)
参考
カテゴリ
Help Center および File Exchange で Genomics and Next Generation Sequencing についてさらに検索
Community Treasure Hunt
Find the treasures in MATLAB Central and discover how the community can help you!
Start Hunting!