% 
Solved this with below code.
signal_peaks= Normalised Signal Amplitude for given (xP,yP).
signal_peaks1=zeros(1,length(signal_peaks));
for i1 = 10:10:(numpoints-10),
     UB=(i1);
     LB=(i1-9);
     AB=[xP(1:LB)' yP(1:LB)'];
     AB_new=[xP(LB:UB)' yP(LB:UB)'];
     LIA=ismembertol(AB,AB_new,0.01,'ByRows',true);
     signal_peaks1(1:LB)=signal_peaks1(1:LB)+ double(LIA)'.*signal_peaks(1:LB); %% Keep adding the intensity every time point is repeated on that location. 
     colors=gray(10000);
     colormap(colors);
     set(gca,'Color','k');
     colormap jet;    
    scat2= scatter(xP(1:i1-1),yP(1:i1-1),'w.','markersize',18) ;% Making old points to white
    scat1.MarkerFaceAlpha=0.3;
    hold on
    scatter(xP(LB:UB),yP(LB:UB),3,signal_peaks1(LB:UB),'filled','o') % Adding 10 new points for persistence
    hold off;
    drawnow
end

