How to use SVM-RFE for feature selection?

13 ビュー (過去 30 日間)
phdcomputer Eng
phdcomputer Eng 2020 年 2 月 15 日
I used thse codes from github for SVM-RFE feature selection
% original code by PKF
% RFE original courtesy of KE YAN, SM
% https://ch.mathworks.com/matlabcentral/fileexchange/50701-feature-selection-with-svm-rfe
clear all
close all
clc;
classes = [1,2,3]; % possible classes/labels
load CP-allGroups;
features_1 = features(labels==classes(1),:);
features_2 = features(labels==classes(3),:);
%% random subSampling
p = min(size(features_1,1), size(features_2,1));
idx = randsample(1:size(features_1,1),p);
features_1 = features_1(idx,:);
idy = randsample(1:size(features_2,1),p);
features_2 = features_2(idy,:);
features = [features_1;features_2];
%% binarize labels
labels = [];
labels(1:p,:) = 1;
labels(p+1:2*p,:) = 0;
labels = logical(labels);
%% parameters RFE & Classification
numFeat = 38; % select the first numFeat highest ranked features
nrFolds = 10; %number of folds of crossvalidation, 10 is standard
kernel = 'linear'; % 'linear', 'rbf' or 'polynomial'
C = 1; % C is the 'boxconstraint' parameter. Small C = Allow for more missclassif.
solver = 'L1QP';
nrRand = 10; % at least equal to 2 for error-calculation
for k = 1:nrRand
cvFolds = crossvalind('Kfold', labels, nrFolds);
for i = 1:nrFolds % iteratre through each fold
testIdx = (cvFolds == i); % indices of test instances
trainIdx = ~testIdx; % indices training instances
param.kertype = 0;
ranking(i,:) = ftSel_SVMRFECBR(features(trainIdx,:),labels(trainIdx), param);
% compare different nr of Features for same train set
for nF = 1:numFeat
%train the SVM
cl = fitcsvm(features(trainIdx,ranking(i,1:nF)), labels(trainIdx),'KernelFunction',kernel,'Standardize',true,...
'BoxConstraint',C,'ClassNames',[0,1],'Solver',solver);
[label,scores] = predict(cl, features(testIdx,ranking(i,1:nF)));
eq = sum(label==labels(testIdx));
accuracy(i) = eq/numel(labels(testIdx));
crossValAcc(i,nF) = mean(accuracy);
end
end
accRFE(k,:) = mean(crossValAcc); % average crossvalidation accuracy for each iteration
rankingAll(i,:) = mode(ranking);
end
%% plotting number of Features vs Accuracy & std(Accuracy)
RFEaccuracy = mean(accRFE);
RFEstdAcc = std(accRFE);
x = 1:numFeat;
errorbar(x,RFEaccuracy,RFEstdAcc)
xlabel('Number of highest-ranked Features')
ylab = sprintf('Classification accuracy and error over %d iterations',nrRand);
ylabel(ylab)
ylim([0.5 1])
xlim([1 numFeat])
but the program shows this error:
Reference to a cleared variable features.
Error in RFE_fitcsvm (line 15)
features_1 = features(labels==classes(1),:);
I want to load lung.mat in this program.(attached)
I'll be very gratefull to have your opinions how to solve this error.Thanks

回答 (0 件)

カテゴリ

Help Center および File ExchangeStatistics and Machine Learning Toolbox についてさらに検索

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!

Translated by