YARN/Hadoop: Bundle#1 start failed: libXt.so.6: cannot open shared object file: No such file or directory
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I am doing the following steps to execute compiled matlab code inside YARN
Step 1:
$mcc -m fileparsers.m -d /home/user/MatLab/fileparsers -o fileparsers
Step 2:
Step 1 produces fileparsers.sh and fileparsers(a binary file). I am copying these files to a shared location on HDFS. I have my Matlab installed
Step 3:
Next, I am putting them in a Oozie workflow and executing it.
The oozie workflow is as follows
<workflow-app name="_matlab_check" xmlns="uri:oozie:workflow:0.5">
<start to="shell-d892"/>
<kill name="Kill">
<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
</kill>
<action name="shell-d892">
<shell xmlns="uri:oozie:shell-action:0.1">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>/projects/xxxx/code/_matlab_workflow_runtime/fileparsers.sh</exec>
<argument>/opt/cloudera/parcels/MATLAB_Runtime/v93</argument>
<env-var>MCR_CACHE_ROOT=/home/user/tmp</env-var>
<file>/projects/xxxx/code/_matlab_workflow_runtime/fileparsers.sh#fileparsers.sh</file>
<file>/projects/xxxx/code/_matlab_workflow_runtime/fileparsers#fileparsers</file>
<capture-output/>
</shell>
<ok to="End"/>
<error to="Kill"/>
</action>
<end name="End"/>
</workflow-app>
Step 4:
I am getting the following error
Log Upload Time: Tue Apr 10 17:04:21 +0200 2018
Log Length: 5688
Bundle#1 start failed: libXt.so.6: cannot open shared object file: No such file or directoryCould not create on-disk crash report: failed opening file: Permission denied
------------------------------------------------------------------------
Segmentation violation detected at Tue Apr 10 17:04:14 2018
------------------------------------------------------------------------
Configuration:
Crash Decoding : Disabled - No sandbox or build area path
Crash Mode : continue (default)
Default Encoding : UTF-8
GNU C Library : 2.17 stable
Host Name : lol-lmao
MATLAB Architecture : glnxa64
MATLAB Root : /opt/cloudera/parcels/MATLAB_Runtime-R2017b/v93
MATLAB Version : 9.3.0.713579 (R2017b)
Operating System : Linux 3.10.0-693.17.1.el7.x86_64 #1 SMP Sun Jan 14 10:36:03 EST 2018 x86_64
Processor ID : x86 Family 6 Model 79 Stepping 1, GenuineIntel
Fault Count: 1
Abnormal termination:
Segmentation violation
Register State (from fault):
RAX = 0000000000000000 RBX = 00007ffee4d62ac0
RCX = 0000000000000000 RDX = 0000000000000001
RSP = 00007ffee4d62a20 RBP = 00007ffee4d62a40
RSI = 00000000000000d8 RDI = 00007ffee4d62ad8
R8 = 00007ffee4d62c80 R9 = 0000000000000001
R10 = 0000000000000004 R11 = 00007f18263ae6d0
R12 = 0000000000000001 R13 = 0000000000842c20
R14 = 00007ffee4d62ad8 R15 = 00007ffee4d62ac0
RIP = 00007f181db69c9e EFL = 0000000000010202
CS = 0033 FS = 0000 GS = 0000
Stack Trace (from fault):
[ 0] 0x00007f181db69c9e bin/glnxa64/libmwfoundation_usm.so+00056478 _ZN10foundation3usm10management10thisthread16ContextActivatorC1INS0_5scope3MvmEEERNS1_7ContextIT_EE+00000014
[ 1] 0x00007f1815f71c36 bin/glnxa64/libmwmcr.so+00457782
[ 2] 0x00007f1815fa80df bin/glnxa64/libmwmcr.so+00680159 _ZN11mcrInstance27feval_on_interpreter_threadEPKciPP11mxArray_tagiS4_+00000063
[ 3] 0x00007f1815fac051 bin/glnxa64/libmwmcr.so+00696401 _ZN11mcrInstance18CallMATLABFunctionEPKciPP11mxArray_tagiS4_PNSt15__exception_ptr13exception_ptrE+00000129
[ 4] 0x00007f1815fac293 bin/glnxa64/libmwmcr.so+00696979 _ZN11mcrInstance10EvalStringERKSbIDsSt11char_traitsIDsESaIDsEEiPP11mxArray_tag+00000131
[ 5] 0x00007f1815fac352 bin/glnxa64/libmwmcr.so+00697170 _ZN11mcrInstance14clearAllOnExitEv+00000050
[ 6] 0x00007f1815fac5a8 bin/glnxa64/libmwmcr.so+00697768 _ZN11mcrInstance6DetachEPS_+00000296
[ 7] 0x00007f18044daa1e bin/glnxa64/libmwMVMLocal.so+00330270 _ZN10mvm_server6inproc8LocalMVM9terminateEv+00000126
[ 8] 0x00007f1815c0ac82 bin/glnxa64/libmwmvm.so+02247810 _ZN3mvm6detail14DefaultSession20terminateFactoryMVMsERKNS_7Factory2IDE+00000258
[ 9] 0x00007f1815be98ab bin/glnxa64/libmwmvm.so+02111659 _ZN3mvm6detail14DefaultFactory16protectedReleaseEv+00000059
[ 10] 0x00007f18044ecb04 bin/glnxa64/libmwMVMLocal.so+00404228 _ZN10mvm_server6inproc12LocalFactory9terminateEv+00000068
[ 11] 0x00007f18044f0a45 bin/glnxa64/libmwMVMLocal.so+00420421
[ 12] 0x00007f1815c4ae8c bin/glnxa64/libmwmvm.so+02510476
[ 13] 0x00007f1815bb9736 bin/glnxa64/libmwmvm.so+01914678 _ZN3mvm14ProcessSession9terminateEv+00000022
[ 14] 0x00007f18162425b7 bin/glnxa64/libmwmclbase.so+00206263 _Z27mclTerminateApplicationImplv+00000103
[ 15] 0x00007f180516dafe bin/glnxa64/libmwmclmcr.so+02202366
[ 16] 0x00007f181626e240 bin/glnxa64/libmwmclbase.so+00385600
[ 17] 0x00007f18044f7735 bin/glnxa64/libmwMVMLocal.so+00448309 _ZN5boost6detail8function21function_obj_invoker0INS_3_bi6bind_tINS3_11unspecifiedENS_9function1IiRKSt6vectorISbIDsSt11char_traitsIDsESaIDsEESaISB_EEEENS3_5list1INS3_5valueISD_EEEEEEiE6invokeERNS1_15function_bufferE+00000037
[ 18] 0x00007f1815f91239 bin/glnxa64/libmwmcr.so+00586297
[ 19] 0x00007f1815f91788 bin/glnxa64/libmwmcr.so+00587656
[ 20] 0x00007f1815f91a93 bin/glnxa64/libmwmcr.so+00588435 _Z12mcr_run_mainRKN5boost9function0IiEEbb+00000243
[ 21] 0x00007f18044f25a8 bin/glnxa64/libmwMVMLocal.so+00427432
[ 22] 0x00007f1815c4a38d bin/glnxa64/libmwmvm.so+02507661
[ 23] 0x00007f181626e6bd bin/glnxa64/libmwmclbase.so+00386749 mclRunMain+00000989
[ 24] 0x00007f180516af02 bin/glnxa64/libmwmclmcr.so+02191106 mclStandaloneGenericMain+00001074
[ 25] 0x00007f1826d3cbd2 bin/glnxa64/libmwlaunchermain.so+00048082
[ 26] 0x0000000000408b06 ./fileparsers+00035590
[ 27] 0x00007f182624bc05 /lib64/libc.so.6+00138245 __libc_start_main+00000245
[ 28] 0x0000000000404544 ./fileparsers+00017732
[ 29] 0x0000000000000000 <unknown-module>+00000000
If this problem is reproducible, please submit a Service Request via:
http://www.mathworks.com/support/contact_us/
A technical support engineer might contact you with further information.
Thank you for your help.
MATLAB is exiting because of fatal error
./fileparsers.sh: line 30: 27040 Killed "./fileparsers"
Failing Oozie Launcher, Main class [org.apache.oozie.action.hadoop.ShellMain], exit code [1]
======================================================= Any idea what is going wrong here?
0 件のコメント
回答 (1 件)
Tim Griffin
2018 年 8 月 24 日
編集済み: Tim Griffin
2018 年 8 月 24 日
I fixed this on Ubuntu 18.x by installing this 1 package:
sudo apt-get -y install libxmu6
0 件のコメント
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