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## peak width calculation methods

さんによって質問されました 2017 年 4 月 13 日

### Matlaber (view profile)

さんによって 回答されました 2019 年 1 月 14 日
Greg Dionne

### Greg Dionne (view profile)

さんの 回答が採用されました
Hi
I'm calculating peak width using half-prominence method . For the peak in the rectangle is there is a method to make the horizontal line the finds the widths to shift up or make vertical line like this image
? . I tried both methods for peak width detection (half-width, half-prominence ) but it gave me the same results .
Half-prominence
close all
order =9 ;
framelen =15;
lx = 20;
% generate sinal
x = 1:1:1432;
y = (AV)';
y = sgolayfilt(y,order,framelen);
% get derivatives
dy = diff(y);
dx = diff(x);
dy_dx = [0 dy./dx];
findpeaks(y,x,'Annotate','extents','MinPeakProminence',0.006);
% get peaks with width computed by 'findpeaks'
[pks,locs,peakWidth1,p] = findpeaks(y,x,'MinPeakProminence',0.006);
half-height :
order =7 ;
framelen =11;
x=-AV;
lx = 20;
sgf = sgolayfilt(x,order,framelen);
hold on;
sgf= 0.02-sgf;
findpeaks(sgf,'MinPeakProminence',0.004,'WidthReference','halfheight','Annotate','extents');
[pks,locs,widths,proms]=findpeaks(sgf,'MinPeakProminence',0.004,'WidthReference','halfheight');
pks = -pks;
plot(locs,pks,'g*');
text(locs+.02,pks,num2str((1:numel(pks))'));

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## 3 件の回答

### Greg Dionne (view profile)

2017 年 4 月 14 日
採用された回答

It seems you are interested in the relative height of the spike with its immediate vicinity (not with respect to higher peaks). To do that, try subtracting off the results of a lowpass or median filter first.
findpeaks(sgf - medfilt1(sgf,21), ...)

#### 1 件のコメント

2017 年 4 月 20 日
thanks

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2017 年 4 月 27 日

2017 年 4 月 27 日

I have added median filter, and tested this data below.
and I got these widths values using this code :
close all
% plot default annotated peaks
subplot(2,1,1);
order =11 ;
framelen =15;
lx = 20;
% generate sinal
x = 1:1:1432;
y = -(Averages)';
y = sgolayfilt(y,order,framelen);
% get derivatives
dy = diff(y);
dx = diff(x);
dy_dx = [0 dy./dx];
%plot(x);
findpeaks(y - medfilt1(y,50),x,'Annotate','extents','MinPeakProminence',0.003);
% get peaks with width computed by 'findpeaks'
[pks,locs,peakWidth1,p] = findpeaks(y,x,'MinPeakProminence',0.003);
subplot(212);
plot(x,y);
My problem is with peak number 6 width which is= 24 ?, I think it calculates the width at the start and end edges .

Greg Dionne

### Greg Dionne (view profile)

2017 年 4 月 27 日
looks like you forgot the medfilt1 in the second call to findpeaks.
You may also try using 'WidthReference' 'halfheight' if you're after FWHM values once you've removed the baseline.
close all
% plot default annotated peaks
order =11 ;
framelen =15;
% generate sinal
y = -(data)';
y = sgolayfilt(y,order,framelen);
%plot(x);
findpeaks(y - medfilt1(y,50),'Annotate','extents','MinPeakProminence',0.003);
% get peaks with width computed by 'findpeaks'
[pks,locs,peakWidth1,p] = findpeaks(y - medfilt1(y,50),'MinPeakProminence',0.003);

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### Matlaber (view profile)

2019 年 1 月 14 日

I still cannot get the meaning how the width being calculated.

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