How can I parse nodes and edges information from XML file

Question

Ahmed 2016 年 2 月 15 日

0
リンク

この質問への直接リンク

https://jp.mathworks.com/matlabcentral/answers/268212-how-can-i-parse-nodes-and-edges-information-from-xml-file

I am new in xml file in matlab. I want to read a xml file (network) with nodes and edges, in order to get the following info:

The node id, label, Human Readable Label, uniprot values The edge id, label, source, target Here is the xml file:

          </node>
          <node id="1696" label="Q13418">
              <att name="shared name" value="Q13418" type="string"/>
              <att name="name" value="Q13418" type="string"/>
              <att name="selected" value="0" type="boolean"/>
              <att name="Taxonomy ID" value="9606" type="string"/>
              <att name="Taxonomy Name" value="human" type="string"/>
              <att name="Human Readable Label" value="ILK" type="string"/>
              <att name="uniprotkb_accession" value="Q13418" type="string"/>
              <att name="uniprot" type="list">
                  <att name="uniprot" value="Q68DZ3" type="string"/>
                  <att name="uniprot" value="B7Z1I0" type="string"/>
                  <att name="uniprot" value="ILK-1" type="string"/>
                  <att name="uniprot" value="ILK-2" type="string"/>
                  <att name="uniprot" value="B7Z418" type="string"/>
                  <att name="uniprot" value="ILK2" type="string"/>
                  <att name="uniprot" value="ILK" type="string"/>
                  <att name="uniprot" value="Q13418" type="string"/>
                  <att name="uniprot" value="ILK1" type="string"/>
                  <att name="uniprot" value="59 kDa serine/threonine-protein kinase"          type="string"/>
                  <att name="uniprot" value="D3DQU0" type="string"/>
                  <att name="uniprot" value="p59ILK" type="string"/>
                  <att name="uniprot" value="P57043" type="string"/>
              </att>
              <att name="psi-mi" type="list">
                  --------
                  --------
                  --------
          </node>
          </edge>
          <edge id="1695" label="Q9NVD7 (EBI-6690276) P48059" source="1689" target="1694" cy:directed="1">
              <att name="shared name" value="Q9NVD7 (EBI-6690276) P48059" type="string"/>
              <att name="shared interaction" value="EBI-6690276" type="string"/>
              <att name="name" value="Q9NVD7 (EBI-6690276) P48059" type="string"/>
              <att name="selected" value="0" type="boolean"/>
              <att name="interaction" value="EBI-6690276" type="string"/>
              <att name="Author" type="list">
                  <att name="Author" value="Zhang et al. (2002)" type="string"/>
              </att>
              <att name="Primary Interaction Type" value="association" type="string"/>
              <att name="Interaction Type" type="list">
                  <att name="Interaction Type" value="association" type="string"/>
              </att>
              -----------
              -----------
              </graphics>
          </edge>