Error - xml file conversion into stochiometric matrix using sbmlimport function

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Namrata Tomar 2015 年 6 月 24 日

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https://jp.mathworks.com/matlabcentral/answers/225123-error-xml-file-conversion-into-stochiometric-matrix-using-sbmlimport-function

コメント済み: Ingrid Tigges 2015 年 6 月 25 日

Hello,

I am using sbmlimport function to convert KEGG pathway SBML (KGML) file into stochiometric matrix. It has .xml extension, but getting this error -- Error using SimBiology.SBMLReadWrite/sbmlread. A fatal error occurred reading in this file. Error in privatesbmlio (line 26). Error in sbmlimport (line 62) ret = privatesbmlio('read',nargout,{fullfilename, varargin});

1. I am using Matlab 2014a. 2. example, m = sbmlimport('lotka.xml'); [M,objSpecies,objReactions] = getstoichmatrix(m1); is working but not for my Kegg Pathway. 3. I downloaded a kegg pathway-http://www.genome.jp/kegg-bin/show_pathway?map=hsa05230&show_description=show. Code is m = sbmlimport('hsa.xml') but it is giving error.