Fulden Buyukozturk

Last seen: 11日前 | 2014 年からアクティブ

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Question about available PK models for practicing purposes
Hi Christos, A couple of thoughts: SimBiolog has a PK library. You can pick a 1 or 2 comp model from there, populate the param...

16日前 | 0

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Visualize selected pathways in simbiology GUI
In R2022b (I understand from the release info that this is the version you're running), you can search both the Diagram and the ...

17日前 | 0

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My Matlab (version R2022b) does not include the SimBiology App by default in the App collection under the Computational Biology section
Hi, In MATLAB you can use Add-Ons Explorer to install SimBiology. Go to Home->Add-Ons->Get add-ons, seach for SimBiology and...

25日前 | 1

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How to build indirect response model?
Hi, If I understand your question correctly, your indirect response model is in derivative form as: dProtein/dt = kin - kout*(...

約2ヶ月前 | 0

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How to plot individual concentration vs time plot by group?
If you have a column in your dataset with the dose info, you can use this column to slice the data using Visual Channels. Please...

2ヶ月前 | 0

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How to make simbiology plot concetratin?
SimBiology returns simulation results of quantities (for example, species) in the user specified units. So if a species is in un...

3ヶ月前 | 0

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How do I convert a BAM file to SAM and GFF file to GTF for use in featurecount?
The featurecount function now accepts BAM files. GFF is not supported by featurecount, but the cuffgffread function can convert ...

6ヶ月前 | 0

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Interested in changing line properties of sbioplot
Hello, These can be set using line object handles, for example: ax = sbioplot(sbiosimulate(m1,d)); h = findobj(ax, 'Type', '...

8ヶ月前 | 2

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simulations of 100 samples (1 time 100 sample size) varied by Height or Weight and export data to excel file using simbiology matlab version 2022a
Hello. You could run a Scan Program to simulate with variations in weight and height. Please see this short video on how to do t...

8ヶ月前 | 1

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SimBiology model for PK/PD of antibacterial drugs
SimBiology model for PK/PD of antibacterial drugs

8ヶ月前 | ダウンロード 4 件 |

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SimBiology model for Target-Mediated Drug Disposition (TMDD)
SimBiology implementation of the Target-Mediated Drug Disposition (TMDD) model

8ヶ月前 | ダウンロード 12 件 |

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Is there any way to export a simbiology model diagram in high resolution?
With R2021b, you can export the diagram as a tiff, png, jpeg, etc. by selecting Export->Export Diagram on Model Builder Home tab...

11ヶ月前 | 0

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Why do I receive an 'Invalid input argument of type 'double'. Input must be a structure or a Java or COM object' error while loading data in a simbiology fit program?
Are you running R2021b and is your dataset has only one group? If so, this is likely a known bug with the app that affects datas...

約1年前 | 0

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How can I change the compartment, species and parameter through variants?
Hi, if you choose Initial Coniditions on the home tab of Model Builder, you will see that the values on the Initial Contitions c...

1年以上前 | 1

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How can i do "code capture" in Simbiology of MATLAB 2020b version?
Hi, The "code capture" tool is not available in the current version of SimBiolgy. However, you can see the MATLAB code behind ...

1年以上前 | 1

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Slider in Simbiology Change Range
Hi Damir, In R2021a you can just type the upper and lower range in the area below the slider and click enter. Please see belo...

1年以上前 | 0

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How can I optimize parallel simulations of a SimBiology model?
Hi Colton, Yes, using SimFunction would be better as it offers easy and efficient parallelization and avoids repeated compilati...

約2年前 | 1

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Where is "RUN GROUP SIMULATION" in Simbiology Version 5.10 (R2020a)?
Hi Isabel, group simulation is no longer available starting 19b. Instead, you can create a scan program where you can input Dose...

2年以上前 | 0

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SimBiology COVID-19 SEIR Model Examples
SimBiology implementations of COVID-19 SEIR models from literature

2年以上前 | ダウンロード 4 件 |

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Can I generate MATLAB code for a PK simulation built with SimBiology APP?
Hi Wei, If you right-click on the program on Model Analyzer and choose View program code, this will open the code for the pro...

2年以上前 | 2

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compartment is not being used in the model
Hi, You can ignore the "compartment is not being used in the model" warning. This warning is a benign bug with this version. S...

2年以上前 | 0

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how to incorpolate various variables in simbiology model
Hi Kazutaka, You can export SimBiology model from GUI to MATLAB workspace and then use a script to add parameters. If you keep...

2年以上前 | 0

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How to do model fitting in simbiology
Hello, You can "dose" Body Weight to achieve this: Set "body weight" column as a dose column - dose2 if you already have an a...

3年弱前 | 1

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How to compute NCA in case of drug infusion in Simbiology? There are options for bolus doses but is there a option to compute for drug infusion regimen?
Hi Praveen, NCA functionality in SimBiology currently doesn't support infusion dosing. Fulden

3年以上前 | 0

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Is there a good tutorial for incorporating some of the MCMC code into a custom task in Simbiology?
Hi Andrew, You can implement this, or custom analyses in general, in SimBiology either by creating a custom task on SimBiology...

3年以上前 | 0

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Noncompartmental Analysis - Using Simbiology Desktop (How to Export the calculated statistics?)
Hi Kevin, if you right click anywhere on the NCA table (the table below the "Table of NCA Parameters" title) you'll be able to c...

4年弱前 | 1

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Pull a conditional subset of a matrix
If a is a matrix of characters, you can do: a= ['00110'; '01000'; '01011'; '01101']; i = strfind(a(:,end)', '1'); b = a(...

約4年前 | 0

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search an array and find the row and column number of a certain element
Let's assume you have the following array: myArray = {'an' 'example' 'p'}; You can use _find_ to obtain indices where the...

約4年前 | 0

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Modeling Synthetic Biology Systems with MATLAB and SimBiology
SimBiology model used in the webinar: Modeling Synthetic Biology Systems with MATLAB and SimBiology

6年以上前 | ダウンロード 2 件 |

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SimBiology implementation of PBPK model for Trichloroethylene (TCE)
SimBiology model describing the metabolism and distribution of TCE using a human PBPK model

6年以上前 | ダウンロード 1 件 |

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