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Fulden Buyukozturk

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Extracting Histogram data for plot generation
You can export the samples you generated using Model Analyzer to an Excel file: Find the samples under your program results Dr...

2ヶ月 前 | 0

回答済み
save parameters after estimates as a variant in simbiology app
You can save parameter estimates as a variant by right clicking on the results and selecting Create a Variant from Estimated Par...

3ヶ月 前 | 2

| 採用済み

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Is there a way to set UseParallel to true directly on Simbiology Model Analyzer for performing fitting with global solvers (e.g., particleswarm)?
Hi - you can do so by clicking on the Parallel icon on the top left corner of the program tab on Model Analyzer. Please see the...

7ヶ月 前 | 0

| 採用済み

回答済み
Multiple Stages in SimBiology Model?
Hi Patrick, 1) You can use Events to implement such dicrete changes. Please see this page for details: https://www.mathworks.c...

11ヶ月 前 | 1

回答済み
Can Simbiology simulate one-to-many scenarios?
You can set the stociometry of your reaction either on the Model Builder App or programmatically. On the app, you can simply mod...

11ヶ月 前 | 0

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can I directly change the ODE?
You cannot edit ODEs directly but you can inspect them using getequations from the command-line or Show model equations option f...

11ヶ月 前 | 1

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Drag a line to create a reaction
Hi Wenye, To connect species with a reaction, press and hold the Ctrl key (on Windows® and Linux®) or the Option key (on macOS...

1年以上 前 | 2

回答済み
simBiology exported model simulation output not in the same order as `InitialValues`
Hello, exported_model.InitialValues lists all of exported_model's editable objects which is by default everything (compartment...

1年以上 前 | 1

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Space saving way to plot bar plot for sbiosobol results
Hi Jesse, You could modify properties of TiledChartLayout to save some space, such as TileSpacing. Below is an example. Oth...

1年以上 前 | 0

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Is it possible to display initial assignments and/or parameters in SimBiology diagram?
That's right, starting R2020b initial assignments are not displayed on the diagram and only parameters that are on the left hand...

1年以上 前 | 0

| 採用済み

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Question about available PK models for practicing purposes
Hi Christos, A couple of thoughts: SimBiolog has a PK library. You can pick a 1 or 2 comp model from there, populate the param...

1年以上 前 | 0

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Visualize selected pathways in simbiology GUI
In R2022b (I understand from the release info that this is the version you're running), you can search both the Diagram and the ...

1年以上 前 | 0

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My Matlab (version R2022b) does not include the SimBiology App by default in the App collection under the Computational Biology section
Hi, In MATLAB you can use Add-Ons Explorer to install SimBiology. Go to Home->Add-Ons->Get add-ons, seach for SimBiology and...

1年以上 前 | 1

回答済み
How to build indirect response model?
Hi, If I understand your question correctly, your indirect response model is in derivative form as: dProtein/dt = kin - kout*(...

1年以上 前 | 0

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How to plot individual concentration vs time plot by group?
If you have a column in your dataset with the dose info, you can use this column to slice the data using Visual Channels. Please...

1年以上 前 | 0

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How to make simbiology plot concetratin?
SimBiology returns simulation results of quantities (for example, species) in the user specified units. So if a species is in un...

2年弱 前 | 0

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How do I convert a BAM file to SAM and GFF file to GTF for use in featurecount?
The featurecount function now accepts BAM files. GFF is not supported by featurecount, but the cuffgffread function can convert ...

約2年 前 | 0

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Interested in changing line properties of sbioplot
Hello, These can be set using line object handles, for example: ax = sbioplot(sbiosimulate(m1,d)); h = findobj(ax, 'Type', '...

約2年 前 | 2

| 採用済み

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simulations of 100 samples (1 time 100 sample size) varied by Height or Weight and export data to excel file using simbiology matlab version 2022a
Hello. You could run a Scan Program to simulate with variations in weight and height. Please see this short video on how to do t...

約2年 前 | 1

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SimBiology model for PK/PD of antibacterial drugs
SimBiology model for PK/PD of antibacterial drugs

約2年 前 | ダウンロード 4 件 |

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SimBiology model for Target-Mediated Drug Disposition (TMDD)
SimBiology implementation of the Target-Mediated Drug Disposition (TMDD) model

約2年 前 | ダウンロード 5 件 |

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Is there any way to export a simbiology model diagram in high resolution?
With R2021b, you can export the diagram as a tiff, png, jpeg, etc. by selecting Export->Export Diagram on Model Builder Home tab...

2年以上 前 | 0

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Why do I receive an 'Invalid input argument of type 'double'. Input must be a structure or a Java or COM object' error while loading data in a simbiology fit program?
Are you running R2021b and is your dataset has only one group? If so, this is likely a known bug with the app that affects datas...

2年以上 前 | 0

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How can I change the compartment, species and parameter through variants?
Hi, if you choose Initial Coniditions on the home tab of Model Builder, you will see that the values on the Initial Contitions c...

3年弱 前 | 1

| 採用済み

回答済み
How can i do "code capture" in Simbiology of MATLAB 2020b version?
Hi, The "code capture" tool is not available in the current version of SimBiolgy. However, you can see the MATLAB code behind ...

約3年 前 | 1

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Slider in Simbiology Change Range
Hi Damir, In R2021a you can just type the upper and lower range in the area below the slider and click enter. Please see belo...

約3年 前 | 0

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How can I optimize parallel simulations of a SimBiology model?
Hi Colton, Yes, using SimFunction would be better as it offers easy and efficient parallelization and avoids repeated compilati...

4年弱 前 | 1

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Where is "RUN GROUP SIMULATION" in Simbiology Version 5.10 (R2020a)?
Hi Isabel, group simulation is no longer available starting 19b. Instead, you can create a scan program where you can input Dose...

4年弱 前 | 0

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SimBiology COVID-19 SEIR Model Examples
SimBiology implementations of COVID-19 SEIR models from literature

約4年 前 | ダウンロード 4 件 |

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Can I generate MATLAB code for a PK simulation built with SimBiology APP?
Hi Wei, If you right-click on the program on Model Analyzer and choose View program code, this will open the code for the pro...

約4年 前 | 2

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