RADIOMICS
-------------------------------------------------------------------------
|<https://github.com/mvallieres/radiomics >|
--> A package providing MATLAB programming tools for radiomics analysis.
-------------------------------------------------------------------------
REFERENCE:
[1] Vallières, M. et al. (2015). A radiomics model from joint FDG-PET and
MRI texture features for the prediction of lung metastases in soft-tissue
sarcomas of the extremities. Physics in Medicine and Biology, 60(14),
5471-5496. doi:10.1088/0031-9155/60/14/5471
-------------------------------------------------------------------------
AUTHOR: Martin Vallières <mart.vallieres@gmail.com>
-------------------------------------------------------------------------
HISTORY:
- Version 1.0: May 2015
-------------------------------------------------------------------------
DISCLAIMER:
"I'm not a programmer, I'm just a scientist doing stuff!"
-------------------------------------------------------------------------
*** THANK YOU FOR YOUR INTEREST IN THIS PACKAGE ***
--> If you have any questions, comments or suggestions about this package,
please do not hesitate to contact me!
This package contains 5 folders:
1. 'TextureToolbox': MATLAB codes to perform texture analysis from an input
2D or 3D region of interest (ROI). This toolbox is self-contained and
can be used on its own outside of the radiomics package. In particular,
this texture analysis package implements wavelet band-pass filtering,
isotropic resampling, discretization length corrections and different
quantization tools. Please see ref. [1] for more details.
2. 'NonTextureFeatures': MATLAB codes to compute features other than textures
from an input 3D region of interest (ROI). Include features such as SUV
metrics, AUC-CSH, Percent Inactive, Size, Solidity, Volume and Eccentricity.
Please see ref. [1] for more details.
3. 'MultivariableModeling': MATLAB codes to perform multivariable analysis
operations such as logistic regression, bootstrapping, feature set
reduction, feature set selection, prediction performance estimation, etc.
4. 'Utilities': MATLAB codes used to perform different operations including
the computation of SUV maps, reading of directory containing DICOM imaging
data, conversion of RTstruct DICOM objects to 3D masks, etc.
5. 'STUDIES': MATLAB codes used for specific studies. To reproduce the
experiments of a given study, please see its corresponding folder.
- 'STSstudy': Ref. [1]. Imaging data and clinical information is
available on The Cancer Imaging Archive (TCIA) website
under the following DOI: <http://dx.doi.org/10.7937/K9/TCIA.2015.7GO2GSKS>.
***************************************************************************
ACKNOWLEDGEMENTS: other software code
- Wei's GLRLM toolbox: Xunkai Wei, Gray Level Run Length Matrix Toolbox
v1.0, Software,Beijing Aeronautical Technology Research Center, 2007.
<http://www.mathworks.com/matlabcentral/fileexchange/17482-gray-level-run-length-matrix-toolbox>
- Q. Li: <http://www.mathworks.com/matlabcentral/fileexchange/23377-ellipsoid-fitting>
- CERR development team: <http://www.cerr.info/>
- Dirk-Jan Kroon (imresize3D.m): <http://www.mathworks.com/matlabcentral/fileexchange/21451-multimodality-non-rigid-demon-algorithm-image-registration/content//functions/imresize3d.m>
- David Reshef and Yakir Reshef: MINE version 1.0.1d <http://www.exploredata.net/>
- DREES development team: <http://www.cerr.info/drees>
- Enric Junqué de Fortuny (fastAUC.cpp): <http://www.mathworks.com/matlabcentral/fileexchange/41258-faster-roc-auc>
- François Beauducel (roundsd.m): <http://www.mathworks.com/matlabcentral/fileexchange/26212-round-with-significant-digits>
- Jos van der Geest (herrorbar.m): <http://www.mathworks.com/matlabcentral/fileexchange/3963-herrorbar>
***************************************************************************
引用
Martin Vallières (2024). RADIOMICS (https://github.com/mvallieres/radiomics), GitHub. 取得済み .
MATLAB リリースの互換性
プラットフォームの互換性
Windows macOS Linuxカテゴリ
- Sciences > Biological and Health Sciences > Biomedical Imaging >
- Industries > Biotech and Pharmaceutical > ROC - AUC >
- Sciences > Physics > Medical Physics >
- Engineering > Biomedical Engineering > Biomedical Imaging >
タグ
謝辞
ヒントを得たファイル: HERRORBAR, Gray Level Run Length Matrix Toolbox, B-spline Grid, Image and Point based Registration, Ellipsoid Fitting, Round with significant digits, Faster ROC-AUC
ヒントを与えたファイル: bin2RTStruct
Community Treasure Hunt
Find the treasures in MATLAB Central and discover how the community can help you!
Start Hunting!MultivariableModeling
MultivariableModeling/Bootstrapping
MultivariableModeling/LogisticRegression
MultivariableModeling/MINE
MultivariableModeling/Utilities
MultivariableModeling/Utilities/batch
MultivariableModeling/Utilities/fastAUC
MultivariableModeling/Utilities/herrorbar
MultivariableModeling/Utilities/roundsd
NonTextureFeatures
STUDIES/HN_study/Functions/AertsSignature
STUDIES/HN_study/Functions/BATCH_COMPUTATIONS
STUDIES/HN_study/Functions/FEATURES_COMPUTATIONS
STUDIES/HN_study/Functions/FEATURES_COMPUTATIONS/Old
STUDIES/HN_study/Functions/FUSION_PET-CT
STUDIES/HN_study/Functions/FUSION_PET-CT/Old
STUDIES/HN_study/Functions/MULTIVARIABLE_MODELING
STUDIES/HN_study/Functions/PRE-PROCESSING
STUDIES/HN_study/Functions/PRE-PROCESSING/PVEcorrection
STUDIES/HN_study/Functions/PRE-PROCESSING/PVEcorrection/Utilities
STUDIES/HN_study/Functions/PRE-PROCESSING/PVEcorrection/Utilities/nonIsotropicGaussianPSF
STUDIES/HN_study/Functions/READ_DATA
STUDIES/HN_study/Functions/READ_DATA/Archives
STUDIES/HN_study/Functions/READ_DATA/DICOM_Import
STUDIES/HN_study/Functions/UTILITIES
STUDIES/HN_study/Functions/UTILITIES/hatchfill2_r7
STUDIES/HN_study/Functions/UTILITIES/kakearney-legendflex-pkg-98b988e
STUDIES/HN_study/Functions/UTILITIES/kakearney-legendflex-pkg-98b988e/legendflex
STUDIES/HN_study/Functions/UTILITIES/kakearney-legendflex-pkg-98b988e/setgetpos_V1.2
STUDIES/HN_study/Functions/UTILITIES/raacampbell-sigstar-9b21ae3
STUDIES/HN_study/WORKSPACE
STUDIES/LGG_study/Functions
STUDIES/LGG_study/WORKSPACE
STUDIES/STS_study/Functions
STUDIES/STS_study/WORKSPACE
TextureToolbox/Pre-processing
TextureToolbox/Pre-processing/Normalization
TextureToolbox/Pre-processing/Quantization
TextureToolbox/Pre-processing/Wavelet
TextureToolbox/Textures/GLCM
TextureToolbox/Textures/GLRLM
TextureToolbox/Textures/GLRLM/Wei_Toolbox
TextureToolbox/Textures/GLSZM
TextureToolbox/Textures/Global
TextureToolbox/Textures/NGTDM
TextureToolbox/Utilities
Utilities
GitHub の既定のブランチを使用するバージョンはダウンロードできません
バージョン | 公開済み | リリース ノート | |
---|---|---|---|
1.2.0.0 | Updating 'Description' |
|
|
1.0.0.0 |
|