This function reads and parses platform annotation table (*.annot) for NCBI Gene Expression Omnibus(GEO). Platform annotation table contain information about platforms.
Input:
filename: filename of the *.annot file
Output:
annotation: platform annotation info platform_table: platform table
Example:
1) obtain a *.annot file
e.g. from ftp://ftp.ncbi.nlm.nih.gov/geo/platforms/GPL2nnn/GPL2883/annot/GPL2883.annot.gz
unzip the file, you will get: GPL2883.annot
2) put the function and the annot file in your working directry, or addpath
3) run function
[annotation, platform_table]=read_annot_file('GPL2883.annot');
引用
Sisi Ma (2025). GEO Platform Annotation Table Reader (https://www.mathworks.com/matlabcentral/fileexchange/43153-geo-platform-annotation-table-reader), MATLAB Central File Exchange. に取得済み.
MATLAB リリースの互換性
プラットフォームの互換性
Windows macOS Linuxカテゴリ
タグ
Community Treasure Hunt
Find the treasures in MATLAB Central and discover how the community can help you!
Start Hunting!バージョン | 公開済み | リリース ノート | |
---|---|---|---|
1.0.0.0 |