How can I count relative proportion of Green/Red pixels in a merged green and red channel fluorescence image?

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Hi there,
I am new with Matlab. I have merged Green/Red fluorescence images of my bacterial colony with strains that express GFP et mCherry (see image here) and I want to count the relative proportion of Green and Red pixels in my colony. Could anyone help me?
Thanks in advance!
Regards,
Fabio Palmieri

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