Hello Jake,
I apologize for the delay. Anyway, I think we may have solved this problem. Great job changing all the subsystems to the right rigid transform translations. We missed two more of them. They were the rigid transform blocks in the Force Test subsystems. Example screenshot below.
You can also take a look at the RC Scope and see that the center is moving only in the vertical direction as shown by the blue line below.
I have also attached the files. Let me know if this was the fix you are looking for.