ngsbrowser

(To be removed) Open NGS Browser to visualize and explore alignments

ngsbrowser will be removed in a future release. Use Genomics Viewer instead.

Description

ngsbrowser opens the NGS Browser app.

ngsbrowser(bmObj) imports the BioMap object bmObj and opens it in the NGS Browser app.

Input Arguments

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Object containing sequence information or short-read sequence alignment data, specified as a BioMap object.

Examples

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Create a BioMap object from a SAM-formatted file.

b = BioMap('ex1.sam');

Display the object in the NGS Browser.

ngsbrowser(b)

Tips

  • Use the NGS Browser to compare the alignment of multiple data sets to a common reference sequence.

  • Use the NGS Browser to investigate regions of interest in the short-read alignment determined by various analyses, such as RNA-Seq, ChIP-Seq, and genetic variation analyses.

Compatibility Considerations

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Warns starting in R2019b

Introduced in R2011b